starling.utilities

Functions

check_device	Function to check the device was correctly set.
check_distance_map_for_error	Check a distance map for physically impossible inter-residue distances.
check_file_exists	Function to check if a file exists.
fix_ref_to_home	Function to fix the path to the home directory.
get_data
get_macOS_version	Function to check the macOS version.
get_off_diagonals	Function to calculate the the off-diagonal elements of a matrix.
helix_dm	Generate an L x L distance matrix for an alpha-helix made of L residues.
parse_output_path	Parse the output path from the command line arguments.
read_starling_ensemble	Function to read a STARLING ensemble from a file in the STARLING format (.starling) or a compressed starling file (.gzip, .xz).
remove_extension	Function to remove the extension from a file.
symmetrize_distance_maps	Symmetrizes a stack of distance maps along an axis by reflecting the upper triangle onto the lower triangle and setting the diagonal values to zero.
write_starling_ensemble	Function to write the STARLING ensemble to a file in the STARLING format (.starling).