Starling Documentation
======================

STARLING combines diffusion-based ensemble generation, sequence-aware embeddings, and high-throughput search.
Use the guides below to install the toolkit, run core workflows, and explore the
Python API.

.. toctree::
   :maxdepth: 1
   :caption: Getting Started

   getting_started
   usage/installation
   usage/cli

.. toctree::
   :maxdepth: 1
   :caption: Core Workflows

   usage/ensemble_generation
   usage/constraints
   usage/performance
   usage/sequence_encoder
   usage/ensemble
   usage/bme_reweighting
   usage/utilities

.. toctree::
   :maxdepth: 1
   :caption: Search & Diagnostics

   usage/search
   usage/possible_issues

.. toctree::
   :maxdepth: 1
   :caption: API Reference

   api