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Getting Started

  • Getting Started
  • Installation
  • Command Line Interface

Core Workflows

  • Ensemble Generation
  • Guided Sampling with Constraints
  • Performance Optimization
  • Sequence Embeddings
  • Working with Ensembles
  • BME Reweighting
  • Utilities

Search & Diagnostics

  • Similarity Search
  • Possible Issues and Solutions

API Reference

  • API reference
starling
  • Overview: module code

All modules for which code is available

  • starling
    • starling.configs
    • starling.data.argument_parser
    • starling.data.data_wrangler
    • starling.data.distributions
    • starling.data.positional_encodings
    • starling.data.schedulers
    • starling.data.tokenizer
    • starling.frontend.ensemble_generation
    • starling.frontend.starling_viz
    • starling.inference.benchmark_mds
    • starling.inference.constraints
    • starling.inference.evaluate_vae
    • starling.inference.generation
    • starling.inference.model_loading
    • starling.models.attention
    • starling.models.blocks
    • starling.models.continuous_diffusion
    • starling.models.diffusion
    • starling.models.ema
    • starling.models.normalization
    • starling.models.quantize
    • starling.models.resnets_original
    • starling.models.transformer
    • starling.models.unet
    • starling.models.vae
    • starling.models.vae_components
    • starling.models.vit
    • starling.samplers.ddim_sampler
    • starling.samplers.ddpm_sampler
    • starling.samplers.plms_sampler
    • starling.search
      • starling.search.builder
      • starling.search.search_engine
      • starling.search.search_utils
      • starling.search.store
    • starling.structure.bme
    • starling.structure.bme_utils
    • starling.structure.coordinates
    • starling.structure.ensemble
    • starling.training.vae_train
    • starling.utilities

© Copyright 2024-2026, Borna Novak, Jeff Lotthammer and Alex Holehouse. Project structure based on the Computational Molecular Science Python Cookiecutter version 1.1.

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